SciSoft OSX 2008.3.1 Installation Notes
Posted on
April 06, 2008 by
Juan
As noted in my last blog post, SciSoft OSX Intel 2008.3.1 was released a few days ago. While I am Cerro Tololo, last night was our “training night” on the instrument, so I did get a decent night of sleep, so I decided to take some time and see what is in this new SciSoft OSX Intel 2008.3.1 package in detail. Because I didn’t want to lose my functional version of SciSoft OSX, especially during an observing run, I first moved the directory containing my functional SciSoft OSX install temporarily out of the way via the command line:
sudo mv /scisoft /scisoft_old
Having done that I double-clicked on the installer package and let it do its thing, installing everything in the /scisoft directory. According the CONTENTS file at the top level of the /scisoft directory, the main changes were
- If you have SuperMongo (SM), you can request the new version. It has jumped from version SM 2.4.16 to SM 2.4.26. I don’t have a license for SuperMongo, so I can’t report much beyond this. This version of SM has Aquaterm support.
- FV, the FITS file viewer, was updated to version 5.1 from version 4.4 (they changed numbering conventions, I think). The CONTENTS file accidentally lists it as version 1.1.
- Numpy (which is used in PyRAF extensively) was updated from version 1.0.3 to the current version 1.0.4.
- stsci_python (which is also used in PyRAF extensively) went from version 2.5 to the current version 2.6.
- The
mkirafcommand line program that creates user’s IRAF directories appears to have been fixed for c-shell users. The bug (along with a fix) had been noted by Nor Pirzkal on his blog, so I am not surprised it was rolled into this release. - The IRAF external packages STSDAS and TABLES when from version 3.7 to current version 3.8. The change in STSDAS includes a new package for processing WFC3 data (since I don’t use HST, I’m not that excited at the moment by this change, but I am sure someone is).
- The ESO-MIDAS version is listed as unchanged from the last release of SciSoft OSX, although the release notes just noted that “[t]his version includes a recompiled version of MIDAS (which was not tested under 10.4)”. The installed version is listed as 07FEBpl1.1 whereas the current version is 08FEBpl1.1.
- The version of DS9 included with this install of SciSoft is the current version 5.1 Aqua. This replaces the X11-based version previously included. I haven’t checked to see if it works in previous MacOS X installs, but it works fine in MacOS 10.5.2 (aka Leopard). If you do need to install a version of ds9 more appropriate to your MacOS X or if you are like me and prefer the X11 version of ds9, you can easily change the installed version.
- If you are using an earlier MacOS X than Leopard and find the Aqua version of DS9 isn’t working, you can download an appropriate DS9 for you at http://hea-www.harvard.edu/RD/ds9/ and install it within SciSoft by noting that SciSoft OSX places the DS9 application at
/scisoft/i386/Applications/SAOImage DS9.app. You could rename the installed DS9 application via the Finder or from the command line,mv /scisoft/i386/Applications/SAOImage\ DS9.app /scisoft/i386/Applications/SAOImage\ DS9\ \(Disabled\).app
then if you want the Tiger (Aqua) version there, just place it in the/scisoft/i386/Applications/directory. - I happen to prefer the X11 version of DS9 usually because I use pipe files to connect my IRAF session to my DS9 session and I have found that the Aqua version of ds9 doesn’t seem to play nicely in this regard. Its for that reason I installed the X11 version over the command line
ds9. To do this, I noticed the command lineds9is at/scisoft/i386/bin/ds9and is just a symbolic link to theds9binary within the Application. You can just rename this symbolic link at /scisoft/i386/bin/ds9 from the command line:mv /scisoft/i386/bin/ds9 /scisoft/i386/bin/ds9.old
and place the executable ds9 file that is in the X11-version tarball of ds9 there instead.mv ds9 /scisoft/i386/bin/ds9
This has the added advantage of leaving the Aqua version of DS9 completely intact.
- If you are using an earlier MacOS X than Leopard and find the Aqua version of DS9 isn’t working, you can download an appropriate DS9 for you at http://hea-www.harvard.edu/RD/ds9/ and install it within SciSoft by noting that SciSoft OSX places the DS9 application at
- I noticed this version of SciSoft OSX does install with me as the owner (instead of user 502). I don’t know if that is because it is defaulting to user 501 or because a change occurred in the SciSoft OSX installer, but its a welcome change.
/usr/local/iraf) and then edit the /scisoft/all/packages/iraf/iraf/unix/hlib/extern.pkg file to point to the newer install, but I thought I would note that. 

